Additional information on model parameters can be found in the Supporting Information

The findings of our study coincide with the well-characterized role of lignin and its intermediates in plant defense. This work characterizes local and systemic metabolic profiles of AA- and ANE-treated tomato with the oomycete-derived MAMP, AA, and the AA-containing biostimulant, ANE. AA and ANE profoundly alter the tomato metabolome toward defense-associated secondary metabolites with notable overlap in enriched metabolite classes compared to H2O control. Further investigation is required to elucidate the functional contribution of these metabolic features in AA- and ANE induced resistance and, more broadly, plant immunity. Our study adds to the understanding of MAMP-induced metabolomes with implications for further development of seaweed-derived bio-stimulants for crop improvement. Although copper-based engineered nanomaterials currently comprise a relatively small fraction of global ENM production ,their toxicity and life cycle characteristics raise concerns regarding their environmental risk. For example, a common use for Cu-based ENMs is as the active ingredient in marine antifouling paints or agricultural biocides,where they are directly introduced into the environment as intentionally toxic substances. Copper based ENMs are somewhat unique among the most widely used ENMs in that they can participate in redox reactions to form three oxidation states: Cu0 , Cu1+, maceta 25 litros and Cu2+. Copper can also participate in a number of inorganic complexes with compounds found in natural waters, such as sulfate, sulfide, phosphate, chloride, and carbonate.

The behavior of different Cu species in the environment is not well understood, and the formation of these various complexes may cause precipitation of ionic copper and alter the surface charge and therefore aggregation and dissolution kinetics of nanoparticulate copper. Solubility for the copper-based ENMs tested in this study have been seen to be enhanced at low pH and by the presence of organic coatings in previous research.Additionally, several copper nanomaterials including Cu2O and CuO have been shown to possess photocatalytic properties,which may pose greater hazard to organisms if suspended in photic surface waters than if sedimented into aphotic sediments. Size,coating,solubility,and photoactivity have all been implicated as playing roles in ENM toxicity and are all affected by water chemistry. Aggregate size is influenced by ionic strength and pH via charge regulation,whereby the effective repulsive surface charge of the ENMs is decreased through ionic shielding and surface de/protonation. Depending on their composition, organic surface coatings can stabilize or destabilize particles in suspension and through the same mechanisms alter interactions between organisms and ENMs.Previous research has shown that copper-based ENMs are toxic to a wide range of organisms, including fungi,aquatic and terrestrial plants,estuarine amphipods, daphnids and protozoa,marine worms and clams,and mussels.It is therefore necessary to develop our understanding of how these materials behave once released into the environment in order to predict at-risk populations and properly regulate their manufacture, use, and disposal.In this study, the physiochemical behaviors of three different species of Cu-based ENMs were quantified in eight natural and artificial waters covering a range of IS, pH, and organic content to gain insight into how these particles may behave in the environment.

Additionally, equilibrium speciation modeling was performed to predict transformations of the Cu ENMs. Based on previous work, we hypothesized that aggregation would largely be controlled by the IS of the water, with more saline waters having greater aggregation due to surface charge shielding, and by the presence of dissolved organic matter that will increase electrostatic and steric repulsion between particles. Due to the propensity for larger, heavier aggregates to settle more rapidly, we hypothesized that sedimentation would be directly related to aggregation kinetics and hence controlled by IS and total organic content . We hypothesized that pH would be the key factor in dissolution with more dissolution occurring at lower pH and that the presence of TOC would also cause a small amount of dissolution. Additionally, we hypothesized that nano-Cu would have the greatest dissolution in oxic waters as it oxidized to Cu2+.Aggregation kinetics of Cu-based ENMs were measured by preparing 10 mg L−1 ENM suspensions in each water through dilution of a 100 mg L−1 stock, probe sonicating for 2 s at 20% amplitude with a Misonix Sonicator S-4000 , and then measuring size trends over time at 20 °C via dynamic light scattering . Measurements were taken every 30 s for 1 h. To measure sedimentation over time, the optical absorbency of suspensions identical to those described above were determined in triplicate every 6 min for 6 h at 320 nm with the exception of nano-Cu in lagoon water, seawater, and diluted seawater, which were measured at 520 nm at a concentration of 20 mg L−1 . Nano-Cu is the only of the three particles where copper is primarily in the zerovalent state, and as such it is able to participate in unique chemical reactions prior to oxidation to the +1 and +2 states.

One of these is the temporary formation of copper chloride compounds in saline waters , which absorbs strongly at 320 nm, the spectral wavelength that was used to detect solid copper. To test the effects of phosphate on nano-CuO, the sedimentation rates, ζ-potential , and pH of 10 mg L−1 nano-CuO in Nanopure water with the addition of 0, 0.1, 0.2, 0.5, 1, and 2 mg PO4 3− L−1 were measured in triplicate. To measure dissolution, ENM suspensions were prepared and stored at room temperature for 0, 1, 7, 14, 21, 30, 60, or 90 days, at which point they were transferred to Amicon Ultra-4 10 kDa centrifugal filter tubes and centrifuged at 4000g for 40 min with a swinging bucket rotor. Filter retention was insignificant.The filtrate was analyzed using a copper ion selective electrode under consistent lighting conditions to minimize light-induced interference. The filtrate was then oxidized with 1.2 vol % HNO3 and 0.9 vol % H2O2 and analyzed for total copper content via inductively coupled plasma atomic emission spectroscopy , with a detection limit of 50 μg L−1 . Standard solutions were measured every 15 samples for quality assurance. Two parameters related to dissolution were quantified: dissolved copper , the total copper content of the ENMs present as free ions , and aqueous phasecopper , the total copper content of the ENMs in the filtrate, which includes dissolved copper, complexed copper 2, etc., and copper bound by ligands under 10 kDa. The ISE that was used to detect free ionic copper was capable of detecting both Cu1+ and Cu2+, both of which may have been shed by the nano-Cu ENMs, but since Cu1+ undergoes rapid disproportionation26 into Cu and Cu2+ and is readily oxidized to Cu2+ in oxic water ,maceta redonda it is unlikely to be present as a free ion in any significant amount. Visual MINTEQ was used to predict speciation and complex formation in the natural waters based on the parameters given in Table 2. Aggregation of nano-Cu and Cu2 particles was characterized by three phases in the 1 h time period measured: immediate aggregation to roughly 5−10 μm in the first few seconds post sonication, a downward trend in aggregate size from 0 to 10 min that was likely due to sedimentation of the largest aggregates out of the water column, and a stable phase in which aggregate diameters averaged 700−2000 nm. Aggregation of nano-Cu and nano-CuO followed the trends outlined in our hypothesis with a few instructive exceptions discussed below, but Cu2 had similar aggregation behaviors in all waters. The polydispersity indices reported from the DLS analysis for Cu2 and nano-Cu were near the arbitrary cutoff value of 1 at all time points in all waters, indicating very broad size distributions. Average aggregate size and statistical groupings for all three ENMs can be found in Table 3. AverageCu2 aggregate size in the third phase did not vary significantly with water type , which may be due to the large proportion of dispersants and other non-Cu ingredients in Kocide 3000. However, despite its high polydispersity, nano-Cu aggregate size correlated significantly with water type . Nano-Cu aggregate size correlated well with IS except in wastewater and storm runoff, which had the highest organic contents of the waters tested by a wide margin. In wastewater, nano-Cu aggregates were smaller than would be predicted by its moderate ionic strength, but aggregates in storm runoff were comparable to those found in the most saline waters. This counter intuitive behavior may be explained by the very low rate of sedimentation of nano-Cu in storm runoff resulting in larger aggregates being retained in the zone measured by DLS.

Nano-CuO displayed markedly different aggregation trends than the other two particles, aggregates being on average smaller and more monodisperse with PDIs ranging from 0.24−0.36. Additionally, aggregate size significantly increased with time in all waters except freshwater and storm runoff, where aggregate size decreased . Given that there was very little sedimentation or dissolution in these two waters over the measurement period , it appears that the low IS of the storm runoff and freshwater media caused disaggregation to occur. Further evidence for this can be found in previous work,which showed that nano-CuO aggregate size decreased over time in Nanopure water with up to 10 mM NaCl but that at higher ionic strength aggregation occurred. Table 3 shows nano-CuO aggregation has a strong positive correlation with IS for all waters but hydroponic media. The large average aggregate size in hydroponic media is likely a result of the decrease in electrostatic repulsion between particles caused by the pH of the media being near the isoelectric point for nano-CuO .Sedimentation kinetics for nano-Cu, Cu2, and nano-CuO over 6 h are shown in Figure 2. In general, sedimentation follows our hypothesis and shows a positive relationship with ionic strength and an inverse relationship with organic content. However, all three particles show different trends depending on their specific composition, and nano-CuO exhibited an unpredicted stabilizing effect due to the presence of phosphate. Cu2 remained relatively well suspended in all waters but groundwater likely due to the proprietary organic dispersants included in its formulation, which give it a high surface charge3 and a low bulk density .Nano-Cu was stable in high TOC waters, namely wastewater and storm runoff, and unstable in the rest. The instability of nano-Cu in hydroponic media may have been due to the low pH of the media causing increased dissolution and subsequent formation of insoluble Cu32 precipitate . Interestingly, aggregate size does not seem to correlate with sedimentation rate in any of the three ENMs tested here. This suggests that aggregate density , stabilizing coatings, and dissolution/ precipitation may be more important predictors of sedimentation rate. Regardless of dispersants or oxidation state, all three particles were unstable in groundwater. This was likely due to the high bicarbonate and low chloride concentrations found in groundwater, resulting in the formation of insoluble copper carbonates. Speciation modeling predicts that in groundwater all three particles will precipitate as malachite 2) at equilibrium . Lagoon water and seawater also had relatively high amounts of HCO3 −, but due to their high Cl− content, atacamite 3) is predicted to be the dominant form at equilibrium. This suggests that these particles are unstable in saline waters. The trends in nano-CuO sedimentation rates can largely be explained as functions of water ionic strength and phosphate content, with waters being grouped into those with and without detectable PO4 3− and IS accounting for order within those groups . For example, waters with undetectable levels of PO4 3− had the highest sedimentation rates by a wide margin and showed increasing sedimentation with increasing IS. To further investigate these trends, the ζ-potential, pH, and sedimentation rates of nano-CuO in Nanopure water with increasing PO4 were measured. Nano-CuO sedimentation rates across a range of seawater/freshwater mixtures were also measured. Figure 3 shows that sedimentation rate increases linearly with IS and slows over time. This has implications for estuarine environments and other areas where waters of varying salinity mix, as it suggests nano-CuO and similar ENMs may sediment from the water column when moving from areas of low salinityto areas of high salinity. Figure 4 shows that PO4 3− has a variable effect on the sedimentation rate of nano-CuO in Nanopure water, causing increased sedimentation at the lowest concentration , decreased sedimentation from 0.2 to 0.5 mg L−1 , and having no effect at 1.0 or 2.0 mg L−1 PO4 3−.

The Qavail conceptualizes the maximum limit to water supply from the soil-root-stem system

The understanding of processes affecting plant water availability has fundamental and applied implications. Recent studies have recognized the key role of roots in promoting acclimation to different types of stress; mainly through preferential growth and control of hydraulic properties that regulate transpiration . A better understanding of root response is, therefore, key for understanding water fluxes through the soil-plant-atmosphere continuum. Accordingly, here we examine the effect of root growth and plant hydraulic conductance on water availability for canopy transpiration of young walnut trees under different levels of water stress.The study was conducted from April 2015 to July 2015, using nine 8-month-old potted walnut trees cv. Chandler, grafted onto Paradox root stock in an experimental greenhouse at the University of California, Davis. Plants were grown in 0.02 m3 pots filled with a 1:3 mixture of a fine sand and organic compost. As the experiment was conducted over a short period and the plants were young, the size of the pots was considered suitable. Pots were kept covered with aluminum foil to avoid soil evaporation and their transparent walls were covered with plastic sheets that were black inside and white outside, to protect roots from light exposure. All pots were maintained at field capacity for at least a week before the beginning of each 10-days period experiment. Replicates were monitored over time due to the careful tracking of soil-plant properties and limited availability of leaf psychrometers and high precision weighing scales for all individuals. Hence,macetas 30l the experiment was replicated using three different plants per treatment monitored over 10- days in three different time periods , for a total of nine receiving one of the irrigation treatments and three control plants.

While temporal replications integrate the effect of different insolation and temperature conditions in the greenhouse at each 10-day sampling event, we expect to observe consistent shifts between T100, T75, T50 throughout the experiment.Stem water potential was measured on expanded terminal leaflets located close to the trunk, every 15 min and averaged to hourly values, with a psychrometer/hygrometer , model PSY-1 . The leaflet equipped with the psychrometer was fully covered with an insulation capsule limiting temperature fluctuations . As the monitored leaf did not transpire, the measurement was representative of stem rather than leaf water potential. An independent measurement of stem water potential was carried out weekly on fully expanded leaflets with a pressure chamber . Prior to this destructive measurement, leaflets were enclosed in foil-laminate bags for at least 10 min . Plant transpiration rate was quantified by automatic weighing of pots on a high precision weighing scale every ten minutes, averaged to hourly values. Draining water was collected daily in plastic reservoirs attached laterally to the bottom of the pots by flexible rubber tubing. Hence, the weight of leaching water did not affect the weighing scale reading until its collection. Both the added irrigation water and collected leachate were weighed and removed from the water balance in order to evaluate the weight loss due to TR . Bulk soil water potential at soil-root interface was monitored by one tensiometer per pot, placed at approximately the midpoint of the root system at 0.2 m depth, and recording data every ten minutes to generate average hourly values. Its porous ceramic cup was connected through a water-filled PVC tube and a smaller acrylic glass tube equipped with a pressure transducer. A rubber cap on top of the tensiometer ensured its air tightness.

All plant and soil measurements were continuously recorded with a data logger located inside the greenhouse. Hourly average air temperature and relative humidity were obtained in an automatic micrometeorological station placed inside the greenhouse. The reference evapotranspiration was obtained by use of an atmometer Model E , that gives one pulse at each 0.254 mm of evaporated water . Hourly vapor pressure  deficit was estimated by the difference between saturated and actual vapor pressure. Saturated vapor pressure was calculated using air temperature based on the Tetens formula . Actual vapor pressure was obtained by saturated vapor pressure multiplied by fractional humidity. We used an empirical water stress indicator based on plant relative transpiration . For each plant, the potential daily transpiration was estimated as a product of the plant standard daily transpiration by the ratio of the actual daily transpiration to TD* of the unstressed plant . The water stress indicator was simply calculated as the ratio of TD to plant potential daily transpiration. An undisturbed leaf was harvested and water extracted using a custom-made cryogenic distillation system suitable for isotopic analysis, adapted from previous studies of this kind . Briefly, the leaves were transferred to individually cut 1.27 cm diameter pyrex tubes where the leaf material was held in place by stainless steel wool. After attachment to a vacuum manifold, leaves were frozen in liquid nitrogen and air evacuated to 100 mTorr. The tube was then flame sealed to preserve the vacuum, and subjected to gravity assisted cryogenic distillation, the top of the tube at 110° C, bottom at −20° C. After distillation, the tube was removed and ice water isolated by flame sealing the tube again to separate water and leaf material. Leaf material was separated and ground to a powder using liquid nitrogen in a mortar and pestle. 3 mg samples were submitted for δ13C determination at the UC Davis Stable Isotope Facility by continuous flow GC-IRMS on a PDZ Europa ANCA-GSL elemental analyzer interfaced to a PDZ Europa 20- 20 isotope ratio mass spectrometer . The water samples were transferred to 2 mL vials and was analyzed for δD by equilibration with water vapor and added hydrogen gas, assisted by a platinum black powder catalyst. Next, CO2 was added to the system and equilibrated with water vapor for δ18O analysis.

Water analysis was performed at the University of Miami by using multi-flow system connected to an Isoprime mass spectrometer . To standardize isotopic data, values are reported in del notation with reference standards as in the equation below. The visible root length was monitored weekly over five weeks from the beginning of each 10-days period experiment by combining root mapping on the transparent walls of the pots and observation of inner root length with minirhizotrons , which provide a nondestructive method for repeated root observations . In addition, weekly root length observations started five weeks before each 10-days period experiment in order to follow the Rl pattern through time. Minirhizotrons consisted of transparent acrylic tubes with an inner diameter of 50 mm, and wall thickness of 3 mm. We used one tube per pot, installed at an angle of 45°, and sealed with silicon. Analyses of Rl were performed weekly with a BTC minirhizotron digital image capture system , located inside the minirhizotron tube. Each observation consisted of systematically taking pictures at one-centimeter intervals from the top to the bottom of the pot in three dimensions, totaling approximately 90 pictures per tube. The Rootfly software was used to analyze root length semi-automatically.Analysis of covariance of linear regressions between hydrogen and oxygen isotope ratios of leaf water showed significant differences in intercept between treatments , but no differences in slope . All experimental pots were covered to suppress soil evaporation, therefore, differences between treatment regression lines relative to the source water line are attributed to changes in leaf transpiration. Differences in intercept tracked expected declines in transpiration rates under drought stress and are consistent with changes in iWUE inferred from carbon isotope ratios . There was no difference between T100 and T75 with respect to iWUE or d-excess, indicating physiological acclimation and maintenance of a steady balance between photosynthesis and transpiration. However, iWUE and dexcess of T50 trees was significantly different from the others, indicating low stomatal conductance .Snapshots of root growth over time are shown in Fig. 6. In general, under well-watered conditions, new roots started to grow before the old roots died and were more frequently observed . Large variability was recorded for relative external and internal patterns of root growth at each sampling event. However, the cumulative total and living root growth detected by the minirhizotron showed significant changes with greater growth observed in the well-watered treatment . Crucially,maceta 25 litros root growth patterns were proportionally and positively related with d-excess . This indicates the existence of a fundamental trade off between root growth and iWUE , by which canopy transpiration and root development can be estimated based on changes in leaf stable isotope ratios. It is important to note, however, that differences between T100 and T75 with respect to either root growth or iWUE were not statistically significant. Therefore, acclimation is possible at that level and high physiological stress seems to be required to study costs and benefits of such a trade off with respect to changes in water supply.Our observations confirmed the decreasing TR as a response of midday depressions of leaf water potential , showing the minimum ψstem in T50 between −1.0 MPa and −2.0 MPa, which was strongly and positively correlated with ψsoil, explaining low TR under deficit irrigation . Indeed, stomata are expected to be completely closed in walnut trees when leaf water potential reaches −1.6 MPa and similar ψstem values and associated stomatal closure have been previously reported in stressed walnut trees , as transpiration rates decrease to prevent leaf dehydration under moderate to high Tair and VPD .

Otherwise, the strong and positive correlation between TR and evaporative demand was noticed for well-watered plants , as observed in previous studies , followed by strong and moderate water limitation . Multiple lines of isotopic evidence integrate the effect of physiological responses to treatments during the entire experiment and corroborate a significant decline in TR under deficit irrigation. Leaf water regressions show significant deviation from source water with reducing water loss by transpiration earlier under water stress has also been recognized in peanut and pearl millet . Here, our results showed an early and rapid decline in transpiration followed by stabilization of water loss in stressed trees, which is consistent with the fraction of “transpirable” soil water general mechanism of declining TR and with the classic descriptions of the plant water stress function . The nonlinear decrease of TR as a function of ψsoil and ψstem can be seen as a water conservative strategy to prevent water loss and leaf dehydration long before being limited by water supply from the soil-root system . Such a strategy lowers the risk of hydraulic failure and increases the iWUE. Considering that the major part of the walnut orchards are located in areas periodically affected by drought and due to its high water requirement over seasons, this observed trend and its further understanding has a key role in the identification and use of relevant physiological traits in plant breeding programs, allowing greater water-use efficiency under deficit conditions. The observed values of Kh fall in the typical range reported for young tree species and annual crops . Our results highlight the decrease of Kh under moderate and strong water limitation . Water  deficit is one of the most important factors affecting Kh , and its decline in response to decreasing stem water potential under water deficit has been reported in walnut at ψstem approaching −1.8 MPa due to cavitation . However, we observed reduced Kh long before reaching such negative stem water potentials . As our Kh only includes hydraulic resistances between the stem and the soil-root interface, its reduction might have been fostered by a combination of poor soil-root contact under lower soil water content and altered root permeability that were described in other species.It turns out that in the T75 treatment, a reduction of stomatal opening due to water limitation occurred long before transpiration was limited by Qavail. Functionally, such stomatal regulation might play the role of extra security margin against hydraulic failure and translate into a so-called water saving behavior at longer term . The results also suggest that the supply-demand view in plant transpiration modeling is inappropriate for walnut, so that more complex models are needed . Despite the significant effect of water deficit on various plant properties, root growth responses over time did not correlate with any other recorded variable, and could did thus not explain changes of Kh. However, our observations suggest that healthy roots rapidly shifted to decaying roots with the continuity of water stress, which means a reduction of root activity and less capacity to take up water .